refactor CLI command modules and synchronize docs

skills/vlm-library-workflow/references/cli-reference.md

@@ -1,3 +1,6 @@
+# Documentation Status
+- Updated to current CLI options on 2026-02-16.
+
 # VLM CLI Reference
 
 ## Configuration
@@ -11,7 +14,7 @@
 - `vlm enrich [--input JSON] [--output JSON] [--refresh-all]`: Fetch TMDB metadata.
 - `vlm analyze [--input JSON] [--output JSON]`: Find gaps and duplicates.
 - `vlm plan [--input JSON] [--analysis JSON] [--output JSON]`: Generate operations.
-- `vlm execute [--plan JSON] [--confirm]`: Move/Rename files.
+- `vlm execute [--plan JSON] [--confirm] [--yes] [--verbose-ops] [--safe-mode] [--preserve-directories]`: Move/Rename/Quarantine operations with safety guards.
 - `vlm rollback [--log PATH]`: Undo operations.
 
 ## Management & Reporting
@@ -22,5 +25,5 @@
 ## Important Config Options (`~/.vlm/config.yaml`)
 - `library_root`: Path to the video collection.
 - `templates`: Naming patterns for movies and series.
-- `plan.duplicate_keep`: Strategy for duplicates (`by_quality`, `by_reputation`, `first_seen`, `manual`).
+- `plan.duplicate_keep`: Strategy for duplicates (`by_quality`, `by_reputation`, `by_reputation_quality_time`, `first_seen`, `manual`).
 - `enrichment.api_keys`: TMDB and OpenAI keys.